Data submission of 3D image sets to a bio-molecular database using active shape models and a 3D reference model for projection

Fons J Verbeek; Don D. Rodrigues; Herman Spaink; Arno Siebes

doi:10.1117/12.527049

15 December 2003 Data submission of 3D image sets to a bio-molecular database using active shape models and a 3D reference model for projection

Fons J Verbeek, Don D. Rodrigues, Herman Spaink, Arno Siebes

Author Affiliations +

Proceedings Volume 5304, Internet Imaging V; (2003) https://doi.org/10.1117/12.527049
Event: Electronic Imaging 2004, 2004, San Jose, California, United States

Abstract

This paper discusses the application of the Active Shape Model as a tool to compute the orientation of a specimen that has been subjected to CLSM imaging. The images have captured patterns of gene expression and these will have to be submitted to and stored in a database. Having all of these patterns available will enable spatio-temporal mining of image data and other linked data. The applications discussed in this paper focus on the zebrafish model system. The gene expression database employs a 3D digital atlas as a reference system in combination with an Active Shape Model. The Active Shape Model is applied with a few anatomical structures and will be scaled up to be usable with more structures in the future.

Citation Download Citation

Fons J Verbeek, Don D. Rodrigues, Herman Spaink, and Arno Siebes "Data submission of 3D image sets to a bio-molecular database using active shape models and a 3D reference model for projection", Proc. SPIE 5304, Internet Imaging V, (15 December 2003); https://doi.org/10.1117/12.527049

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